Update submission scripts

project/src/submit-all.sh

@@ -3,6 +3,7 @@
 NODES="1 2 4 8"
 OMP_THREADS="1 2 4 10 20"
 THREADS_PER_NODE=20
+PROBLEM=$1
 
 for n in $NODES 
 do
@@ -14,6 +15,6 @@ do
 	sbatch -N $n \
 	    --tasks-per-node=$TASKS_PER_NODE \
 	    --cpus-per-task=$CPUS_PER_TASK \
-	    ./submit.sh 
+	    ./submit.sh $PROBLEM
     done
 done

project/src/submit.sh

 #!/bin/bash
-#SBATCH -t 00:05:00
+#SBATCH -t 00:10:00
 #SBATCH -J diffusion
 #SBATCH -o diffusion_mpi_%j.out
 #SBATCH -e diffusion_mpi_%j.err
@@ -9,10 +9,11 @@ cat $0
 module purge
 module load foss/2019b
 
-OUTPUT_FILE="results.csv"
+PROBLEM=$1
+OUTPUT_FILE=$PROBLEM".csv"
 
 # OpenMP setup
 export OMP_NUM_THREADS=$SLURM_CPUS_PER_TASK
 export OMP_PROC_BIND=TRUE
 
-mpiexec  --map-by ppr:$SLURM_NTASKS_PER_NODE:node:PE=$SLURM_CPUS_PER_TASK ./diffusion | tee -a $OUTPUT_FILE
+mpiexec  --map-by ppr:$SLURM_NTASKS_PER_NODE:node:PE=$SLURM_CPUS_PER_TASK ./diffusion -f=$PROBLEM | tee -a $OUTPUT_FILE